Epitope extraction technique using a proteolytic magnetic reactor combined with Fourier-transform ion cyclotron resonance mass spectrometry as a tool for the screening of potential vaccine lead peptides

Epitope extraction technique is based on the specific digestion of a target protein followed by immunoaffinity isolation of a specific recognition peptide. This technique, in combination with mass spectrometry, has been efficiently used for epitope identification. The major goal of this work was to utilize newly developed enzyme and immunoaffinity magnetic reactors for the epitope extraction procedure and confirm the efficiency of this improved system for epitope screening of proteins. Alginic acid-coated magnetite microparticles with immobilized TPCK-trypsin provided high working efficiency with low non-specific adsorption, digestion time in minutes and low frequency of missed cleavages. The sensitivity and specificity of tryptic fragmentation of the beta-amyloid-peptide Abeta (1-40) as a model polypeptide was confirmed by Fourier-transform ion cyclotron resonance mass spectrometry analysis. The Sepharose reactor or immunoaffinity magnetic reactors, both with anti-amyloid-beta monoclonal antibodies, were used for specific isolation and identification of target peptides. In this way, the epitope extraction technique combined with mass spectrometric analysis is shown to be an excellent base for molecular screening of potential vaccine lead proteins.     

Janus-type isopropyl groups revealed by 1H-NMR spectra of alkylpyridines with lanthanide shift reagents (LSR)

Two Isomeric pyridines were designed and prepared : 2-isopropyl-4,5,6-trimethyl-(3) and 2-isopropyl-3,4,6-trimethyl-pyridine (7); the latter, with a buttressed isopropyl, leads to much lower induced shifts by Eu(dpm)₃ and Pr(dpm)₃ than the former, owing to the conformation in which the Janus-type iPr group how to the LSR a t-butyl-like face.     

On the reduced phase space of a cotangent bundle

The geometric prequantization of a reduced phase space of a cotangent bundle is described and its relation with the geometric prequantization of the cotangent bundle is pointed out.     

The standard enthalpies of formation of some dibenzoannelated cycloalkanols

The heats of combustion of trans-9,10-bis-hydroxymethyl-9,10-dihydrophenanthrene, trans-5-hydroxymethyl-5,6-dihydro-7H-dibenzo[a,c]cyclohepten-6-ol, 5-hydroxymethyl-5,6-dihydro-7H-di-benzo[a,c]cycloheptene, 6-hydroxymethyl-5,6-dihydro-7H-dibenzo[a,c]cycloheptene, 5H-dibenzo-[a,d]cyclohepten-5-ol and 5H-10,11-dihydrodibenzo[a,d]cyclohepten-5-ol were measured by means of a Gallenkamp adiabatic bomb calorimeter. Uncertainties in the determination of the heats of combustion ranged between 0.2 and 0.3%. The enthalpies of formation and atomization for the six compounds were derived. The experimental values of the heats of atomization were compared with those calculated using the Allen–Skinner bond energy scheme. Conclusions about energetic contributions which stabilize the structure of the investigated compounds were drawn.     

Stereochemistry of cyclobutanone resulted from cycloadditions of t-butylcyanoketene to bicyclo[2.2.1]heptene derivatives, as evidence for a π2s+π2a reaction mode

The stereochemistry of the cyclobutanones 1-7, resulted from the reaction of t-butylcyanoketene with bicyclo[2.2.1]heptene, bicyclo[2.2.1]heptadiene, 1,4 - dihydro - 1,4 - methanonaphthalene, 1,4 - dihydro - 9 - (1 - methylethylidene) - 1,4 - methanonaphthalene, 1,4 - dihydro - 1,4 - epoxynaphthalene, l,4,4a,8b - tetrahydro - 1,4 - methanobiphenylene (l,4,4a,8b) and 1,4,4a,8b - tetrahydro - 1,4 - methanobiphenylene(1,4,4aβ,8bβ) was established as having the cyclobutanone ring exo and the t-Bu group in the configuration. These findings represent a stereochemical argument in favour of a _π2_s + _π2_a reaction mode of t-butylcyanoketene to the above mentioned bicyclo[2.2.1]heptene derivatives. Observations regarding preservation of the original configurations of alkenes as well as the geometrical distorsion of the cyclobutanones are shortly discussed.     

Removal of heavy metal ions from aqueous solutions using low-cost sorbents obtained from ash

This study’s main objective was the development of effective low-cost sorbents for the removal of heavy metal ions from aqueous solutions. The influence of different factors on the sorption capacity of ash and modified ash as low-cost sorbents obtained by different methods was investigated. The synthesis of new ash-based materials was carried out at ambient temperature (20°C), 70°C, and 90°C, respectively, in an alkaline medium with NaOH concentrations of 2 M and 5 M, respectively, corresponding to a mixture with solid/liquid ratios of 1: 3 and 1: 5, respectively. The prepared materials (sorbents) were characterised by scanning electron microscopy (SEM), energy dispersive X-ray analysis (EDAX), X-ray diffraction, and BET surface measurement. Adsorption isotherms were determined using the batch equilibrium method. The results showed that these types of new materials displayed a good capacity to remove copper, nickel, and lead ions (29.97 mg of Cu²⁺ per g of sorbent, 303 mg of Ni²⁺ per g of sorbent, and 1111 mg of Pb²⁺ per g of sorbent) from aqueous solutions. The modified materials were prepared using an alkaline attack (a recognised method used in previous studies), but Romanian ash from a thermal power plant was studied for the above purpose for the first time. Hence, the factors which affect the sorption capacity of the prepared low-cost sorbents were determined and their behaviour was explained, taking into account the composition and structure of the new materials.     

Controlled Radical Polymerization

Various methods which lead to the control of molecular weight and polydispersities, and which allow for the preparation of block copolymers by radical polymerization are discussed. Thermal polymerizationof styrenes in the presence of stable radicals, polymerization of vinyl acetate and methyl methacrylate in the presence of chromium complexed by macrocyclic ligands polymerization of vinyl acetate initiated by organoaluminum compounds complexed by dipyridyl and activated by stable radicals, as well as in the presence of phosphites, are described in detail.     

Resonance Energy Transfer in a Genetically Engineered Polypeptide Results in Unanticipated Fluorescence Intensity

The fluorescence intensity of a C-terminal acceptor chromophore, N-(7-dimethylamino-4-methyl coumarin (DACM), increased proportionally with 280 nm irradiation of an increasing number of donor tryptophan residues located on a β-sheet forming polypeptide. The fluorescence intensity of the acceptor chromophore increased even as the length of the β-sheet edge approached 256 Å, well beyond the Förster radius for the tryptophan–acceptor chromophore pair. The folding of the peptides under investigation was verified by circular dichroism (CD) and deep UV resonance Raman experiments. Control experiments showed that the enhancement of DACM fluorescence occurred concomitantly with peptide folding. In other control experiments, the DACM fluorescence intensity of the solutions of tryptophan and DACM did not show any enhancement of DACM fluorescence with increasing tryptophan concentrations. Formation of fibrillar aggregates of the substrate peptides prepared for the fluorescence studies was undetectable by thioflavin T (ThT) fluorescence.     

Electrically insulated molecular wires

This paper is an up-to-date mini-review based on literature data and own results regarding synthesis and properties of conducting (pseudo)rotaxane supramolecular structures. Conjugated polymers, such as polyarylene, polyheteroarylene, polyaniline, polyarylenevinylene or polyaryleneimine, were used as axle, while the macrocyclic components were cyclodextrins, cucurbiturils, cyclophanes or crown ethers. Properties of the supramolecular structure such as solubility, thermal or chemical stability, conductivity, etc. can be drastically modified by the inclusion of hydrophobic conjugated polymers inside the macrocycle, without any chemical modification. For instance, the photophysical properties (i.e. quantum yield of fluorescence and electroluminescence) of the supramolecular structures were enhanced when compared with uninsulated conjugated polymers. The doping process is also affected, because the access of a dopant to the conjugated chain is limited only to the uncovered domains of the conjugated chain.     

The obtaining of NiCr2O4 nanoparticles by unconventional synthesis methods

This paper presents a study regarding the obtaining of NiCr₂O₄ by two new unconventional synthesis methods: (i) the first method is based on the formation of Cr(III) and Ni(II) carboxylate-type precursors in the redox reaction between the nitrate ion and 1,3-propanediol. The thermal decomposition of these complex combinations, at ~300 °C, leads to an oxide mixture of Cr₂O_3+x and NiO, with advanced homogeneity, small particles and high reactivity. On heating this mixture at 500 °C, Cr₂O₃ reacts with NiO to form NiCr₂O₄, which was evidenced by FT-IR and X-ray diffractometry (XRD) analysis; (ii) the second method starts from a mechanical mixture of (NH₄)₂Cr₂O₇ and Ni(NO₃)₂·6H₂O. On heating this mixture, a violent decomposition at 240 °C with formation of an oxides mixture (Cr₂O₃ + CrO₃) and NiO takes place. On thermal treatment up to 500 °C, an intermediary phase NiCrO₄ is formed, which by decomposition at ~700 °C leads to NiCr₂O₄, evidenced by FT-IR and XRD analysis. NiCr₂O₄ is formed, in both cases, starting with a temperature higher than 400 °C, when the non-stoichiometric chromium oxide (Cr₂O_3+x ) loses the oxygen excess and turns to stoichiometric chromium oxide (Cr₂O₃), which further reacts with NiO.